Monday, January 28, 2013

Genomics related Like

source : http://www.dnalink.com/main/sub06_02.php


1. Database
dbSNP at NCBI http://www.ncbi.nlm.nih.gov/SNP
  International HapMap Project http://hapmap.ncbi.nlm.nih.gov
CHIP Bioinformatics Tools http://snpper.chip.org
  KSNP DB System http://ksnp.ngri.go.kr
The JSNP Database http://snp.ims.u-tokyo.ac.jp
  the Human Cytochrome P450 (CYP) Allele Nomenclature Committee http://www.cypalleles.ki.se
PharmGKB http://www.pharmgkb.org
The NIEHS SNPs Program http://egp.gs.washington.edu
GeneSNPs at the Utah Genome Center http://www.genome.utah.edu/genesnps
  The HGVbase http://www.hgvbase.org
 
  2. SNP chip
  Genetic Analysis Software List    http://www.nslij-genetics.org/soft
  Structure http://pritch.bsd.uchicago.edu/software.html
  GRR http://www.sph.umich.edu/csg/abecasis/GRR
UCSC Genome browser    http://genome.ucsc.edu
International HapMap HapMart http://hapmart.hapmap.org
Haploview    http://www.broad.mit.edu/mpg/haploview
  Phase http://stephenslab.uchicago.edu/software.html
  plink http://pngu.mgh.harvard.edu/~purcell/plink
 
  3. CNV
Database of Genetic Variants    http://projects.tcag.ca/variation
  Autism CNV Database http://projects.tcag.ca/autism_500k
 
  4. Expression
SOURCE Search http://genome-www5.stanford.edu/cgi-bin/source/sourceSearch
Panther  http://www.pantherdb.org/help/PANTHERhelp.jsp
Go miner http://discover.nci.nih.gov/gominer/index.jsp 21
DAVID Bioinformatics resource    http://david.abcc.ncifcrf.gov/home.jsp 

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